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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_535083_537339_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
535083 - 537339
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CGACTACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGATACTCGACT
Flanking Amino Acid:
MQRGRDHGLPGYISWRQFCR
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
70
0.45
1
62.2
38.6
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
55.6
0.26
1.8
74.64
41.5

Associated Gene:

Gene:
EPX
Ensembl Gene ID:
ENSAPLG00000010848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011324
532938 - 550283
17346