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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_538121_539914_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
538121 - 539914
Intron Length:
1794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCCA
5'SS Class:
major
3'SS Sequence:
TGTTTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGCAATTAATT
Flanking Amino Acid:
ARKIVGAMIQIITYRDYLPL
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.5
42.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79
0.65
0.7
78
30.8
Minor 5ss
29
-2.4
3.5
39.1
46.2
Minor BPS
48.7
-0
1.7
63.81
39.9

Associated Gene:

Gene:
EPX
Ensembl Gene ID:
ENSAPLG00000010848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011324
532938 - 550283
17346