About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_542721_543735_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
542721 - 543735
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCCA
5'SS Class:
major
3'SS Sequence:
TATCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTCCTTATCT
Flanking Amino Acid:
AKQPPCFPIKIPPNDPRVKN
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.7
42.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
87
0.83
0.7
85.2
29.2
Minor 5ss
29.3
-2.4
3.4
39.7
45.8
Minor BPS
81.1
1.05
1.4
94.66
32.3

Associated Gene:

Gene:
EPX
Ensembl Gene ID:
ENSAPLG00000010848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011324
532938 - 550283
17346