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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_543943_545074_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
543943 - 545074
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TCATCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTGCCTTCATC
Flanking Amino Acid:
KRVSGFPFPLVRKVSNEIVR
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
70.8
39.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.6
0.49
1
65.8
35.7
Minor 5ss
38.7
-1.3
3
53.5
38.2
Minor BPS
59.6
0.28
1.9
69.44
42.9

Associated Gene:

Gene:
EPX
Ensembl Gene ID:
ENSAPLG00000010848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011324
532938 - 550283
17346