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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_547520_548487_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
547520 - 548487
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGTT
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATTC
Flanking Amino Acid:
VDSAYKDTRDRIKKNLENDV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
75.4
34.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
31.4
-2.1
3.6
48.1
47.5
Minor BPS
52.7
0.07
1.6
62.95
37

Associated Gene:

Gene:
EPX
Ensembl Gene ID:
ENSAPLG00000010848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011324
532938 - 550283
17346