About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5515720_5521525_F

Intron Information:

Intron Rank:
146159
Intron Class:
major
Intron Phase:
Intron Coordinates:
5515720 - 5521525
Intron Length:
5806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCAG
5'SS Class:
major
3'SS Sequence:
CCCACCTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCCCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.5
45
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.8
0.33
0.9
62.2
33.2
Minor 5ss
29.1
-2.4
3.4
38.3
46.7
Minor BPS
47.7
-0
2.1
73.49
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028727
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047659
5510978 - 5521713
10736