Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5517718_5519579_F

Intron Information:

Intron Rank:

146154

Intron Class:

major

Intron Phase:

Intron Coordinates:

5517718 - 5519579

Intron Length:

1862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGACTGCA

5'SS Class:

major

3'SS Sequence:

AAATAACCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

AATTAAATAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

71.1

34.7

Major BPS

73.8

0.59

0.9

26.8

Major PPT

62.2

0.27

52.3

41.7

Minor 5ss

33.1

-1.9

3.1

41.6

Minor BPS

48.9

-0.1

66.08

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028727

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023322

5510978 - 5519591

8614