Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5551564_5552289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5551564 - 5552289

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

GTTGGTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGGCAT

U12 Branch Point Sequence:

TGCTGGGCAACC

Flanking Amino Acid:

AQQTLSFFKQEALLSLWISY

Intron Amino Acid Position:

672

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.6

37.3

Major BPS

-0

1.5

60.7

45.9

Major PPT

0.54

66.3

40.8

Minor 5ss

31.2

-2.1

3.5

46.7

48.6

Minor BPS

35.8

-1

2.7

50.68

46.1

Associated Gene:

Gene:

TMEM132E

Ensembl Gene ID:

ENSAPLG00000009524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009914

5550535 - 5560578

10044