Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5552844_5553421_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5552844 - 5553421

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCCCATCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CTGTCCCCATCC

Flanking Amino Acid:

GWRVPILPDRRSVRDSEHEE

Intron Amino Acid Position:

514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

74.9

35.3

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

67.6

0.4

0.8

60.8

28.9

Minor 5ss

28.5

-2.5

3.4

40.8

45.6

Minor BPS

45.7

-0.3

2.1

59.24

45.6

Associated Gene:

Gene:

TMEM132E

Ensembl Gene ID:

ENSAPLG00000009524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009914

5550535 - 5560578

10044