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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_557367_563616_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
557367 - 563616
Intron Length:
6250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCTTTCTCT
Flanking Amino Acid:
DAFPPSSESQLNPDGSVDQS
Intron Amino Acid Position:
1979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
81.4
0.71
0.8
80.8
31.1
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
47.9
-0
3.6
87.39
38.7

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982