Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5590934_5591079_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5590934 - 5591079

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGCATG

5'SS Class:

major

3'SS Sequence:

CTGTCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAG

U12 Branch Point Sequence:

CTGAGCTGAGCT

Flanking Amino Acid:

ITLCYENLAQRAPAVPDKCC

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

62.5

43.8

Major BPS

47.4

-0.1

1.5

42.8

41.8

Major PPT

71.4

0.48

0.8

62.2

34.7

Minor 5ss

38.8

-1.3

45.2

43.7

Minor BPS

44.2

-0.3

2.1

61.43

47.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026310

5589916 - 5592492

2577