About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5593417_5593789_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5593417 - 5593789
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CCCCATCTAACA
Flanking Amino Acid:
TLPNCSRRGVRVELLKGRKV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
70.6
0.46
0.8
61.2
35.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
44.6
-0.4
1.8
49.88
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026938
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023610
5592892 - 5593889
998