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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_55938_56153_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55938 - 56153
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATAT
Flanking Amino Acid:
VDYPNSTKAKKFFLCLFVGA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
56.9
0.29
1.9
78.87
42.6

Associated Gene:

Gene:
BUD23
Ensembl Gene ID:
ENSAPLG00000030203
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024634
53984 - 57918
3935