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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5595519_5595699_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5595519 - 5595699
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGCATCCTAACG
Flanking Amino Acid:
TSTSCSQPGVVLVTTKGREI
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.9
37.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
33.5
-1.9
2.7
39.1
38.9
Minor BPS
48.2
-0.2
1.8
51.81
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031023
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027693
5595313 - 5595790
478