Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5597683_5597800_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5597683 - 5597800

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCATC

5'SS Class:

major

3'SS Sequence:

CCGGCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

CCTCCCAGGACT

Flanking Amino Acid:

MFRLGIKIPDRDAAWEEDGA

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.3

76.2

39.9

Major BPS

0.5

1.1

71.2

35.2

Major PPT

64.6

0.33

0.9

57.4

33.3

Minor 5ss

39.4

-1.2

2.9

52.1

44.7

Minor BPS

48.3

-0

1.8

66.64

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009741

5591526 - 5598279

6754