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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5597915_5598143_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5597915 - 5598143
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCGGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
CCTTGGTGACCA
Flanking Amino Acid:
PVGREQSEDTGPWRLLLCSS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
65
0.34
0.9
54.6
40.9
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
38.6
-0.8
2.5
51.11
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009358
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009741
5591526 - 5598279
6754