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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5599224_5599404_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5599224 - 5599404
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGCATCCTAACG
Flanking Amino Acid:
TSSNCSQPGVILVTKKGREI
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
48.2
-0.2
1.8
51.81
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027650
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023553
5598133 - 5600531
2399