Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5616128_5617033_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5616128 - 5617033

Intron Length:

906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

AAATCCTCAGCC

Flanking Amino Acid:

AVKLVKESDRRAKEAEHLKQ

Intron Amino Acid Position:

454

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.1

80.7

34.4

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

83.9

0.76

0.8

77.8

Minor 5ss

-1.2

3.3

56.2

Minor BPS

0.11

1.8

63.98

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010280

5612054 - 5630563

18510