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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5617252_5617796_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5617252 - 5617796
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GTAACTACAAAA
Flanking Amino Acid:
DEARQANEALLRSQEAAELL
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.2
0.73
0.7
81.5
30.6
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
43.4
-0.5
1.8
52.98
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510