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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5619342_5621121_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5619342 - 5621121
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTGTCTGAACA
Flanking Amino Acid:
IRNISYSEKELTIKPLDKKA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
65.1
41.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.4
0.44
1
65.5
39.9
Minor 5ss
43.4
-0.7
2.8
56.2
48
Minor BPS
63
0.4
1.6
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510