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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_56200_56484_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56200 - 56484
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AAGTTCCTAATT
Flanking Amino Acid:
FVGASGTLPKGLGTECADGE
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
90.6
0.91
0.7
89
28.1
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
58.2
0.34
1.6
71.9
39.2

Associated Gene:

Gene:
BUD23
Ensembl Gene ID:
ENSAPLG00000030203
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024634
53984 - 57918
3935