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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5621787_5622786_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5621787 - 5622786
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CCTGCTGTAATC
Flanking Amino Acid:
AWYAEHRGIARDEAEMNYLK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
81.1
0.7
0.8
73.8
36.5
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
47.4
-0.2
2.1
56.67
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510