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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5622870_5623092_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5622870 - 5623092
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GTATCTTCAAAG
Flanking Amino Acid:
LAHDELLPKRVLRQYQLTAE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
80.7
0.69
0.7
73.4
31.6
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
53.3
-0
1.7
58.96
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510