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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5623162_5623953_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5623162 - 5623953
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCA
5'SS Class:
major
3'SS Sequence:
TTCCTTGGGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AAAAGCTGAAAT
Flanking Amino Acid:
LLASYAVQAKYGDYDPNFHE
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
67.7
37.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
66.4
0.37
1.1
63.7
41.8
Minor 5ss
34.5
-1.8
2.9
42
44.6
Minor BPS
45.4
-0.2
1.9
60.25
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510