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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5628768_5630431_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5628768 - 5630431
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTATTT
Flanking Amino Acid:
VDAEMEFSCEMKWKGKDLFD
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
51.9
0.14
1.9
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009847
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010280
5612054 - 5630563
18510