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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5636859_5637369_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5636859 - 5637369
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTCTTGTTAAAA
Flanking Amino Acid:
MGSQLREKQALDDRNQTMS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
71.3
0.48
1.1
64.8
45.7
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
56.2
0.19
2.1
71.75
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010523
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010959
5636832 - 5638983
2152