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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_563746_564922_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
563746 - 564922
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAACGTTGATC
Flanking Amino Acid:
GSMDDDGFYYGELNQQRGLV
Intron Amino Acid Position:
1936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
78.2
0.63
0.9
73.8
41.4
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
48.4
-0.1
2.1
59.95
39.4

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982