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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5637517_5638692_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5637517 - 5638692
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTCCTTCCACA
Flanking Amino Acid:
RLVLDPYLLKFFNKRKTYFA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
54
0.12
2
73.01
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010523
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044112
5636127 - 5638983
2857
ENSAPLT00000010959
5636832 - 5638983
2152