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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5642093_5645898_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5642093 - 5645898

Intron Length:

3806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

TGTTAATATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TCCTTGTTAATA

Flanking Amino Acid:

RLSAGGGLALRGLVSSASRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

84.4

0.85

34.5

Major PPT

73.5

0.53

67.1

42.9

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

55.2

0.16

2.1

65.77

41.9

Associated Gene:

Gene:

NIPSNAP2

Ensembl Gene ID:

ENSAPLG00000010581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043099

5642007 - 5654769

12763

ENSAPLT00000011053

5642007 - 5655469

13463