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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_564995_566634_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
564995 - 566634
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCAGC
5'SS Class:
major
3'SS Sequence:
TTGTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTTGTTCATT
Flanking Amino Acid:
KESSPNADAEAELTFSAGDI
Intron Amino Acid Position:
1912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
67.1
44.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.5
0.75
0.8
78.2
34.9
Minor 5ss
45.3
-0.5
2.7
61.2
43.3
Minor BPS
48.7
-0
2.4
74.4
43.5

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982