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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5652161_5653421_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5652161 - 5653421
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAAAG
Flanking Amino Acid:
PGTMIEWGNYWARAIRFRQD
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.9
0.56
0.9
69.4
37
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
71.1
0.53
1.5
72.17
40.6

Associated Gene:

Gene:
NIPSNAP2
Ensembl Gene ID:
ENSAPLG00000010581
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043099
5642007 - 5654769
12763
ENSAPLT00000011053
5642007 - 5655469
13463