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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5660796_5662115_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5660796 - 5662115
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTGCAATAACT
Flanking Amino Acid:
ATDMEACPPADCFIGFGGNV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78
0.63
1
72.6
42.4
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
50.6
0.1
2
72.6
43.9

Associated Gene:

Gene:
PSPH
Ensembl Gene ID:
ENSAPLG00000010694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011144
5660685 - 5672347
11663