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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5662265_5663082_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5662265 - 5663082
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TGTCCTTCCACT
Flanking Amino Acid:
FANRLKFYFNGEYAGFDETQ
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
73.8
30.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
73.5
0.53
0.9
65.1
40.9
Minor 5ss
37.2
-1.4
3.2
47.6
42.6
Minor BPS
50.9
0.11
2
74.55
42.1

Associated Gene:

Gene:
PSPH
Ensembl Gene ID:
ENSAPLG00000010694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011144
5660685 - 5672347
11663