About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5664980_5665680_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5664980 - 5665680
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
GATCACAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGTCACTGATTT
Flanking Amino Acid:
FCGVGDAVAEMTRRAMGGTV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
61.8
0.27
1.1
56.4
43
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
47.7
-0.1
1.9
68.65
41.7

Associated Gene:

Gene:
PSPH
Ensembl Gene ID:
ENSAPLG00000010694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011144
5660685 - 5672347
11663