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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5676451_5676621_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5676451 - 5676621
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
GTGTCGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATGCTTACCC
Flanking Amino Acid:
TNLGPKGTMKMLVSGAGDIK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.1
38.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
65.7
0.35
1
57.6
38.6
Minor 5ss
25.5
-2.8
3.4
32.8
42.6
Minor BPS
54.2
0.11
2.1
66.7
44.9

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011