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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5676686_5678040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5676686 - 5678040
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AACTTCTTACTT
Flanking Amino Acid:
KDGNVLLQEMQIQHPTASLI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.2
0.61
0.9
77.1
36.8
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
59
0.36
1.6
70.6
41

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011