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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5679221_5679917_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5679221 - 5679917
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TCTCATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATCT
Flanking Amino Acid:
EMKHKSETDTALIRGLVLDH
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.8
43.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.8
80.8
30.8
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
54.2
0.21
1.8
72.47
44.4

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011