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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5680029_5680354_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5680029 - 5680354
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
TCNVSLEYEKTEVSSGFFYK
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
81.9
0.72
0.7
73.1
31.7
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011