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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_568030_568406_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
568030 - 568406
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTCCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TATCCATTGATA
Flanking Amino Acid:
PPPKPRRSKKELDKQEKHKS
Intron Amino Acid Position:
1865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
72.3
37.8
Major BPS
76.2
0.65
1
67
39.8
Major PPT
75.6
0.58
0.8
71.2
28.4
Minor 5ss
38.8
-1.3
3.1
52.5
44.7
Minor BPS
59.8
0.3
1.6
70.26
35.2

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982