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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5680515_5680764_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5680515 - 5680764
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATCC
Flanking Amino Acid:
DKGFVVINQKGIDPFSLDAL
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
82.4
1
1.4
90.52
30.4

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011