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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5681913_5682029_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5681913 - 5682029
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TGCTTGTGAAGT
Flanking Amino Acid:
LRAVKNAIEDGCVVPGAGAL
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
44.7
-0.3
2.3
64.64
45.8

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011