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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5682791_5682966_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5682791 - 5682966
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
YNVKKQLLHSCTVIASNILL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.7
77.7
35.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
CCT6B
Ensembl Gene ID:
ENSAPLG00000010870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011369
5676317 - 5683327
7011