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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5685100_5687403_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5685100 - 5687403
Intron Length:
2304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
TCTTCCTTGACA
Flanking Amino Acid:
DKYPVTNRDFRKAVSLGKQV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
79.2
0.66
0.9
75.9
32.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
85.4
1.11
1
86.55
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011312
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020573
5684270 - 5687503
3234