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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5686086_5686989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5686086 - 5686989
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TAATGCTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATCTGTTCAATC
Flanking Amino Acid:
MKKKVTQKLEPAGPGSSIKD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.4
0.48
1
62
43.8
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
48.7
-0.1
1.9
60.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011312
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037809
5684963 - 5689137
4175