About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5686086_5687905_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5686086 - 5687905
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
MKKKVTQKLEGDFPRVDTAE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81
0.7
0.8
76.8
30.8
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011312
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036495
5684963 - 5689137
4175