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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5686757_5687905_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5686757 - 5687905
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
LPIEKAFWRQGDFPRVDTAE
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81
0.7
0.8
76.8
30.8
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011312
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046196
5684270 - 5689137
4868