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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5688684_5689031_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5688684 - 5689031
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAA
U12 Branch Point Sequence:
GGATCCCTAACT
Flanking Amino Acid:
SANHKARVTTRMGNTPDSAS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
63.1
0.33
1.1
55.4
40.3
Major PPT
78
0.63
0.9
83.2
25.6
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
66.7
0.6
1.7
80
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011312
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036495
5684963 - 5689137
4175
ENSAPLT00000011795
5684963 - 5689137
4175
ENSAPLT00000046196
5684270 - 5689137
4868
ENSAPLT00000037809
5684963 - 5689137
4175