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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5698992_5699624_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5698992 - 5699624
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
GTGTCTGCCATT
Flanking Amino Acid:
EAARPDITYQEPQAAQPAYQ
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
77.9
0.63
0.9
74.1
35.3
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
40.6
-0.6
2.4
60.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012325
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012821
5698818 - 5700489
1672