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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5704161_5714622_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5704161 - 5714622
Intron Length:
10462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TACAAGTTAACT
Flanking Amino Acid:
RVRCSAAITSRWGRGFGLLG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.8
0.67
0.9
72.5
37.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
49.2
0.02
2.3
71.02
45.2

Associated Gene:

Gene:
VKORC1L1
Ensembl Gene ID:
ENSAPLG00000019287
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023281
5703967 - 5715657
11691