Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5714733_5715430_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5714733 - 5715430

Intron Length:

698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

GCAGCAGTAACT

Flanking Amino Acid:

LVFYILQMLLGMTASAVAAL

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.1

0.99

0.8

92.6

23.1

Major BPS

54.4

0.11

1.2

36.4

Major PPT

84.8

0.78

0.8

79.9

32.1

Minor 5ss

41.8

-0.9

2.9

57.3

41.2

Minor BPS

45.2

-0.2

2.3

62.57

46.9

Associated Gene:

Gene:

VKORC1L1

Ensembl Gene ID:

ENSAPLG00000019287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023281

5703967 - 5715657

11691